Abstract: This article aims to offer a reconstruction of Islamic theology learning. Theology learning in higher education in Indonesia by only discussing the main topic of classic theology has become certain culture. It has potential to become the trigger of religious exclusivity and intolerance emergence. The reconstruction of Islamic theology aims to make Islamic theology learning as the foundation of religious inclusivity and tolerance. This system supports the spirit of prophetic social science which is created to be prophtic educational science, especially theology learning. The results of this study offers important topics of discussion which cover classic theology theme, theology in the perspective of philosophy and tasawuf salafi, theology in the perspective of prophetic social science with humanization based through humanism teaching of Hamzah Fansuri, Cak Nur and Gus Dur liberation, and transcendence through learning system at traditional Islamic Boarding School, until producing thoroughly religious understanding and not instant as the harmonism capital and religious theology inclusivity.